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ArcticZymes R2D Ligaseᵀᴹ

ArcticZymes R2D Ligaseᵀᴹ

Unique ATP dependent dsDNA ligase able to join RNA to DNA

ArcticZymes R2D Ligaseᵀᴹ

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ArcticZymes RNA to DNA Ligase (ArcticZymes R2D Ligase™) is the first ligase on the market that is able to ligate DNA to 5’-phosphorylated ends of RNA in the presence of a DNA template positioning the joinable ends. With its unique substrate specificity, ArcticZymes R2D Ligase allows the development of new technologies in molecular biology research, diagnostics, and manufacturing.

Key Features:

  • Novel substrate specificity
  • RNA to DNA ligation
  • High purity
  • Detergent free
  • Efficient ligation of DNA to 5’-phosphorylated ends of RNA in the presence of a DNA template positioning the ligatable ends of DNA and RNA
  • ATP dependent dsDNA ligase
  • Utilizes Mg ₂ or Mn₂

Suggested Applications:

  • RNA capturing
  • In vitro transcription  
  • NGS library prep
  • Transcriptome amplification
  • miRNA detection/analysis
  • RNA splint ligation

Figures

ArcticZymes R2D Ligase - Figure 1
Figure 1. Substrate specificity
ArcticZymes R2D Ligase - Figure 1

Legend:

+++ almost complete ligation of substrate

++ about 50% ligation of substrate

+ detectable ligation activity (<< 50%)

ArcticZymes R2D Ligase exhibits the unique feature of being able to ligate DNA to both the 5’- and the 3’ end of RNA in the presence of a DNA template positioning the ligatable ends of DNA and RNA. When compared to other ligases, the efficiency of this activity in ArcticZymes R2D Ligase clearly stands out as proven when using a fluorescein labelled oligo neighboring a phosphorylated oligo forming a nick. Successful ligation of the nick increases the length of the fluorophore-labelled oligo resulting in slower migration during gel separation. AZ Prototype L18 and L19 are novel ligases soon to be available as prototypes.

Properties

Specifications
Source

Recombinantly expressed in E. coli.

Unit Definition

One milliunit is defined as the amount of enzyme needed to ligate 1 pmol (of 18 pmol) of a nicked DNA substrate in 20 minutes at 25 °C in a 20 µl reaction volume in a buffer consisting of 62.5 mM Tris-HCl, pH 7.5 (25°C), 5 mM MgCl₂, 1 mM ATP, 10 mM DTT, 0.025 mg/ml BSA and 25 mM KCl.

Size

52.9 k Da

Inactivation

ArcticZymes R2D Ligase can be completely inactivated by incubating at 70°C for 10 minutes.

Storage and Stability

The enzyme is stable at -20°C for 1 year in the supplied storage buffer

Quality Control

ArcticZymes is dedicated to the quality of our products. ArcticZymes R2D DNA Ligase is manufactured at our ISO 13485 certified facility in Norway.

dsDNA endonuclease activity

2.5 U R2D Ligase was incubated with a supercoiled plasmid (1 µg) for 4 hours at 37°C. Agarose gel electrophoresis did not reveal any transformation of closed circular DNA to nicked DNA.

ssDNA endonuclease activity

2.5 U R2D Ligase was incubated with M13 ssDNA (0.5 µg) for 4 hours at 37°C. Agarose gel electrophoresis did not reveal any visible signs of ssDNA degradation.

Exonuclease activity

2.5 U R2D Ligase was incubated with either 3H-dATP labelled ds or ssDNA (0.5 µg, 500 bp) for 4 hours at 37°C. Acid soluble radioactivity from labelled DNA was not significantly over blank test for either substrate

RNase activity

2.5 U R2D Ligase was incubated with a 2 kb RNA transcript (1 µg) for 4 hours at 37°C. Agarose gel electrophoresis did not reveal any visible signs of RNA degradation.

E. coli gDNA contamination

2.5 U R2D Ligase was analysed in a probe-based qPCR assay detecting the 23S ribosomal sub-unit in E. coli. No E. coli gDNA could be detected (LOD: < 3 E. coli genomic copies).

Recommended Protocols

Ordering Info

Quantity
Product Name
SKU
Pack Size
Concentration
Price
1
72100-201
AZscript RT
72100-201
10000 U
200 U/μl
$ 119.00 USD
Request Quote
1
80200-250
Heat&Run gDNA Removal Kit
80200-250
250 rxn
$ 631.00 USD
531.00
631.00
Request Quote
1
80400-100
PCR Decontamination Kit
80400-100
100 rxn
$ 107.00 USD
Request Quote
1
71600-201
ArcticZymes Proteinase
71600-201
50 U
>200 U/ml
$ 150.00 USD
127.00
150.00
Request Quote
2
80400-500
PCR Decontamination Kit
80400-500
500 rxn
$ 431.00 USD
Request Quote
2
80200-50
IsoPol™ BST⁺
80200-50
50 rxn
$ 161.00 USD
135.00
161.00
Request Quote
2
72100-100
AZscript RT
72100-100
As per request
As per request
$ 0.00 USD
Request Quote
2
71600-110
ArcticZymes Proteinase
71600-110
1000 U
>200 U/ml
$ 1,375.00 USD
1151.00
1375.00
Request Quote
3
71600-100
ArcticZymes Proteinase
71600-100
As per request
>200 U/ml
$ 0.00 USD
Request Quote
4
71610-100
ArcticZymes Proteinase Glycerol-FREE
71610-100
As per request
>200 U/ml
$ 0.00 USD
Request Quote
Note: Article no. 71502-202 and 71502-120 are provided with IsoPol® BST+ 10X Buffer and MgSO4 .
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